RNA 3D Hub //

9MME Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_9MME_0011/U/41:46No text annotation
HL_9MME_0021/U/116:121No text annotation
HL_9MME_0031/U/147:152No text annotation
HL_9MME_0041/U/169:173No text annotation
HL_9MME_0051/U/250:254No text annotation
HL_9MME_0061/U/279:288No text annotation
HL_9MME_0071/U/336:341No text annotation
HL_9MME_0081/U/433:442No text annotation
HL_9MME_0091/U/452:455No text annotation
HL_9MME_0121/U/553:558No text annotation
HL_9MME_0131/Y/41:46No text annotation
HL_9MME_0141/Y/116:121No text annotation
HL_9MME_0151/Y/147:152No text annotation
HL_9MME_0161/Y/169:173No text annotation
HL_9MME_0171/Y/250:254No text annotation
HL_9MME_0181/Y/279:288No text annotation
HL_9MME_0191/Y/336:341No text annotation
HL_9MME_0201/Y/433:442No text annotation
HL_9MME_0241/Y/553:558No text annotation
HL_9MME_0251/c/41:46No text annotation
HL_9MME_0261/c/116:121No text annotation
HL_9MME_0271/c/147:152No text annotation
HL_9MME_0281/c/169:173No text annotation
HL_9MME_0291/c/250:254No text annotation
HL_9MME_0301/c/279:288No text annotation
HL_9MME_0311/c/336:341No text annotation
HL_9MME_0321/c/433:442No text annotation
HL_9MME_0361/c/553:558No text annotation
HL_9MME_0371/g/41:46No text annotation
HL_9MME_0381/g/116:121No text annotation
HL_9MME_0391/g/147:152No text annotation
HL_9MME_0401/g/169:173No text annotation
HL_9MME_0411/g/250:254No text annotation
HL_9MME_0421/g/279:288No text annotation
HL_9MME_0431/g/336:341No text annotation
HL_9MME_0441/g/433:442No text annotation
HL_9MME_0481/g/553:558No text annotation
HL_9MME_0491/k/41:46No text annotation
HL_9MME_0501/k/116:121No text annotation
HL_9MME_0511/k/147:152No text annotation
HL_9MME_0521/k/169:173No text annotation
HL_9MME_0531/k/250:254No text annotation
HL_9MME_0541/k/279:288No text annotation
HL_9MME_0551/k/336:341No text annotation
HL_9MME_0561/k/433:442No text annotation
HL_9MME_0601/k/553:558No text annotation
HL_9MME_0611/o/41:46No text annotation
HL_9MME_0621/o/116:121No text annotation
HL_9MME_0631/o/147:152No text annotation
HL_9MME_0641/o/169:173No text annotation
HL_9MME_0651/o/250:254No text annotation
HL_9MME_0661/o/279:288No text annotation
HL_9MME_0671/o/336:341No text annotation
HL_9MME_0681/o/433:442No text annotation
HL_9MME_0721/o/553:558No text annotation
HL_9MME_0731/s/41:46No text annotation
HL_9MME_0741/s/116:121No text annotation
HL_9MME_0751/s/147:152No text annotation
HL_9MME_0761/s/169:173No text annotation
HL_9MME_0771/s/250:254No text annotation
HL_9MME_0781/s/279:288No text annotation
HL_9MME_0791/s/336:341No text annotation
HL_9MME_0801/s/433:442No text annotation
HL_9MME_0841/s/553:558No text annotation
HL_9MME_0851/w/41:46No text annotation
HL_9MME_0861/w/116:121No text annotation
HL_9MME_0871/w/147:152No text annotation
HL_9MME_0881/w/169:173No text annotation
HL_9MME_0891/w/250:254No text annotation
HL_9MME_0901/w/279:288No text annotation
HL_9MME_0911/w/336:341No text annotation
HL_9MME_0921/w/433:442No text annotation
HL_9MME_0961/w/553:558No text annotation

Problematic loops

#loop idProblemSequence
HL_9MME_010No text annotation
HL_9MME_011No text annotation
HL_9MME_021No text annotation
HL_9MME_022No text annotation
HL_9MME_023No text annotation
HL_9MME_033No text annotation
HL_9MME_034No text annotation
HL_9MME_035No text annotation
HL_9MME_045No text annotation
HL_9MME_046No text annotation
HL_9MME_047No text annotation
HL_9MME_057No text annotation
HL_9MME_058No text annotation
HL_9MME_059No text annotation
HL_9MME_069No text annotation
HL_9MME_070No text annotation
HL_9MME_071No text annotation
HL_9MME_081No text annotation
HL_9MME_082No text annotation
HL_9MME_083No text annotation
HL_9MME_093No text annotation
HL_9MME_094No text annotation
HL_9MME_095No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_9MME_0021/U/29:37,
1/U/50:51		No text annotation
IL_9MME_0031/U/56:57,
1/U/191:193		No text annotation
IL_9MME_0041/U/104:107,
1/U/130:133		No text annotation
IL_9MME_0051/U/111:114,
1/U/123:126		No text annotation
IL_9MME_0061/U/162:165,
1/U/177:180		No text annotation
IL_9MME_0071/U/196:201,
1/U/540:546		No text annotation
IL_9MME_0081/U/205:207,
1/U/533:536		No text annotation
IL_9MME_0091/U/212:216,
1/U/521:528		No text annotation
IL_9MME_0101/U/218:219,
1/U/363:365		No text annotation
IL_9MME_0111/U/221:224,
1/U/357:361		No text annotation
IL_9MME_0121/U/267:271,
1/U/297:300		No text annotation
IL_9MME_0131/U/271:273,
1/U/294:297		No text annotation
IL_9MME_0141/U/331:333,
1/U/344:346		No text annotation
IL_9MME_0151/U/367:373,
1/U/421:426		No text annotation
IL_9MME_0161/U/475:477,
1/U/500:505		No text annotation
IL_9MME_0191/Y/29:37,
1/Y/50:51		No text annotation
IL_9MME_0201/Y/56:57,
1/Y/191:193		No text annotation
IL_9MME_0211/Y/104:107,
1/Y/130:133		No text annotation
IL_9MME_0221/Y/111:114,
1/Y/123:126		No text annotation
IL_9MME_0231/Y/162:165,
1/Y/177:180		No text annotation
IL_9MME_0241/Y/196:201,
1/Y/540:546		No text annotation
IL_9MME_0251/Y/205:207,
1/Y/533:536		No text annotation
IL_9MME_0261/Y/212:216,
1/Y/521:528		No text annotation
IL_9MME_0271/Y/218:219,
1/Y/363:365		No text annotation
IL_9MME_0281/Y/221:224,
1/Y/357:361		No text annotation
IL_9MME_0291/Y/267:271,
1/Y/297:300		No text annotation
IL_9MME_0301/Y/271:273,
1/Y/294:297		No text annotation
IL_9MME_0311/Y/331:333,
1/Y/344:346		No text annotation
IL_9MME_0321/Y/367:373,
1/Y/421:426		No text annotation
IL_9MME_0331/Y/475:477,
1/Y/500:505		No text annotation
IL_9MME_0361/c/29:37,
1/c/50:51		No text annotation
IL_9MME_0371/c/56:57,
1/c/191:193		No text annotation
IL_9MME_0381/c/104:107,
1/c/130:133		No text annotation
IL_9MME_0391/c/111:114,
1/c/123:126		No text annotation
IL_9MME_0401/c/162:165,
1/c/177:180		No text annotation
IL_9MME_0411/c/196:201,
1/c/540:546		No text annotation
IL_9MME_0421/c/205:207,
1/c/533:536		No text annotation
IL_9MME_0431/c/212:216,
1/c/521:528		No text annotation
IL_9MME_0441/c/218:219,
1/c/363:365		No text annotation
IL_9MME_0451/c/221:224,
1/c/357:361		No text annotation
IL_9MME_0461/c/267:271,
1/c/297:300		No text annotation
IL_9MME_0471/c/271:273,
1/c/294:297		No text annotation
IL_9MME_0481/c/331:333,
1/c/344:346		No text annotation
IL_9MME_0491/c/367:373,
1/c/421:426		No text annotation
IL_9MME_0501/c/475:477,
1/c/500:505		No text annotation
IL_9MME_0531/g/29:37,
1/g/50:51		No text annotation
IL_9MME_0541/g/56:57,
1/g/191:193		No text annotation
IL_9MME_0551/g/104:107,
1/g/130:133		No text annotation
IL_9MME_0561/g/111:114,
1/g/123:126		No text annotation
IL_9MME_0571/g/162:165,
1/g/177:180		No text annotation
IL_9MME_0581/g/196:201,
1/g/540:546		No text annotation
IL_9MME_0591/g/205:207,
1/g/533:536		No text annotation
IL_9MME_0601/g/212:216,
1/g/521:528		No text annotation
IL_9MME_0611/g/218:219,
1/g/363:365		No text annotation
IL_9MME_0621/g/221:224,
1/g/357:361		No text annotation
IL_9MME_0631/g/267:271,
1/g/297:300		No text annotation
IL_9MME_0641/g/271:273,
1/g/294:297		No text annotation
IL_9MME_0651/g/331:333,
1/g/344:346		No text annotation
IL_9MME_0661/g/367:373,
1/g/421:426		No text annotation
IL_9MME_0671/g/475:477,
1/g/500:505		No text annotation
IL_9MME_0701/k/29:37,
1/k/50:51		No text annotation
IL_9MME_0711/k/56:57,
1/k/191:193		No text annotation
IL_9MME_0721/k/104:107,
1/k/130:133		No text annotation
IL_9MME_0731/k/111:114,
1/k/123:126		No text annotation
IL_9MME_0741/k/162:165,
1/k/177:180		No text annotation
IL_9MME_0751/k/196:201,
1/k/540:546		No text annotation
IL_9MME_0761/k/205:207,
1/k/533:536		No text annotation
IL_9MME_0771/k/212:216,
1/k/521:528		No text annotation
IL_9MME_0781/k/218:219,
1/k/363:365		No text annotation
IL_9MME_0791/k/221:224,
1/k/357:361		No text annotation
IL_9MME_0801/k/267:271,
1/k/297:300		No text annotation
IL_9MME_0811/k/271:273,
1/k/294:297		No text annotation
IL_9MME_0821/k/331:333,
1/k/344:346		No text annotation
IL_9MME_0831/k/367:373,
1/k/421:426		No text annotation
IL_9MME_0841/k/475:477,
1/k/500:505		No text annotation
IL_9MME_0871/o/29:37,
1/o/50:51		No text annotation
IL_9MME_0881/o/56:57,
1/o/191:193		No text annotation
IL_9MME_0891/o/104:107,
1/o/130:133		No text annotation
IL_9MME_0901/o/111:114,
1/o/123:126		No text annotation
IL_9MME_0911/o/162:165,
1/o/177:180		No text annotation
IL_9MME_0921/o/196:201,
1/o/540:546		No text annotation
IL_9MME_0931/o/205:207,
1/o/533:536		No text annotation
IL_9MME_0941/o/212:216,
1/o/521:528		No text annotation
IL_9MME_0951/o/218:219,
1/o/363:365		No text annotation
IL_9MME_0961/o/221:224,
1/o/357:361		No text annotation
IL_9MME_0971/o/267:271,
1/o/297:300		No text annotation
IL_9MME_0981/o/271:273,
1/o/294:297		No text annotation
IL_9MME_0991/o/331:333,
1/o/344:346		No text annotation
IL_9MME_1001/o/367:373,
1/o/421:426		No text annotation
IL_9MME_1011/o/475:477,
1/o/500:505		No text annotation
IL_9MME_1041/s/29:37,
1/s/50:51		No text annotation
IL_9MME_1051/s/56:57,
1/s/191:193		No text annotation
IL_9MME_1061/s/104:107,
1/s/130:133		No text annotation
IL_9MME_1071/s/111:114,
1/s/123:126		No text annotation
IL_9MME_1081/s/162:165,
1/s/177:180		No text annotation
IL_9MME_1091/s/196:201,
1/s/540:546		No text annotation
IL_9MME_1101/s/205:207,
1/s/533:536		No text annotation
IL_9MME_1111/s/212:216,
1/s/521:528		No text annotation
IL_9MME_1121/s/218:219,
1/s/363:365		No text annotation
IL_9MME_1131/s/221:224,
1/s/357:361		No text annotation
IL_9MME_1141/s/267:271,
1/s/297:300		No text annotation
IL_9MME_1151/s/271:273,
1/s/294:297		No text annotation
IL_9MME_1161/s/331:333,
1/s/344:346		No text annotation
IL_9MME_1171/s/367:373,
1/s/421:426		No text annotation
IL_9MME_1181/s/475:477,
1/s/500:505		No text annotation
IL_9MME_1211/w/29:37,
1/w/50:51		No text annotation
IL_9MME_1221/w/56:57,
1/w/191:193		No text annotation
IL_9MME_1231/w/104:107,
1/w/130:133		No text annotation
IL_9MME_1241/w/111:114,
1/w/123:126		No text annotation
IL_9MME_1251/w/162:165,
1/w/177:180		No text annotation
IL_9MME_1261/w/196:201,
1/w/540:546		No text annotation
IL_9MME_1271/w/205:207,
1/w/533:536		No text annotation
IL_9MME_1281/w/212:216,
1/w/521:528		No text annotation
IL_9MME_1291/w/218:219,
1/w/363:365		No text annotation
IL_9MME_1301/w/221:224,
1/w/357:361		No text annotation
IL_9MME_1311/w/267:271,
1/w/297:300		No text annotation
IL_9MME_1321/w/271:273,
1/w/294:297		No text annotation
IL_9MME_1331/w/331:333,
1/w/344:346		No text annotation
IL_9MME_1341/w/367:373,
1/w/421:426		No text annotation
IL_9MME_1351/w/475:477,
1/w/500:505		No text annotation

Problematic loops

#loop idProblemSequence
IL_9MME_001No text annotation
IL_9MME_017No text annotation
IL_9MME_018No text annotation
IL_9MME_034No text annotation
IL_9MME_035No text annotation
IL_9MME_051No text annotation
IL_9MME_052No text annotation
IL_9MME_068No text annotation
IL_9MME_069No text annotation
IL_9MME_085No text annotation
IL_9MME_086No text annotation
IL_9MME_102No text annotation
IL_9MME_103No text annotation
IL_9MME_119No text annotation
IL_9MME_120No text annotation
IL_9MME_136No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_9MME_0011/U/229:230,
1/U/320:331,
1/U/346:352		No text annotation
J3_9MME_0021/U/235:246,
1/U/258:264,
1/U/303:315		No text annotation
J3_9MME_0031/Y/229:230,
1/Y/320:331,
1/Y/346:352		No text annotation
J3_9MME_0041/Y/235:246,
1/Y/258:264,
1/Y/303:315		No text annotation
J3_9MME_0051/c/229:230,
1/c/320:331,
1/c/346:352		No text annotation
J3_9MME_0061/c/235:246,
1/c/258:264,
1/c/303:315		No text annotation
J3_9MME_0071/g/229:230,
1/g/320:331,
1/g/346:352		No text annotation
J3_9MME_0081/g/235:246,
1/g/258:264,
1/g/303:315		No text annotation
J3_9MME_0091/k/229:230,
1/k/320:331,
1/k/346:352		No text annotation
J3_9MME_0101/k/235:246,
1/k/258:264,
1/k/303:315		No text annotation
J3_9MME_0111/o/229:230,
1/o/320:331,
1/o/346:352		No text annotation
J3_9MME_0121/o/235:246,
1/o/258:264,
1/o/303:315		No text annotation
J3_9MME_0131/s/229:230,
1/s/320:331,
1/s/346:352		No text annotation
J3_9MME_0141/s/235:246,
1/s/258:264,
1/s/303:315		No text annotation
J3_9MME_0151/w/229:230,
1/w/320:331,
1/w/346:352		No text annotation
J3_9MME_0161/w/235:246,
1/w/258:264,
1/w/303:315		No text annotation
J4_9MME_0011/U/99:100,
1/U/137:138,
1/U/161:162,
1/U/180:181		No text annotation
J4_9MME_0021/U/451:452,
1/U/455:456,
1/U/467:468,
1/U/512:513		No text annotation
J4_9MME_0031/Y/99:100,
1/Y/137:138,
1/Y/161:162,
1/Y/180:181		No text annotation
J4_9MME_0041/Y/451:452,
1/Y/455:456,
1/Y/467:468,
1/Y/512:513		No text annotation
J4_9MME_0051/c/99:100,
1/c/137:138,
1/c/161:162,
1/c/180:181		No text annotation
J4_9MME_0061/c/451:452,
1/c/455:456,
1/c/467:468,
1/c/512:513		No text annotation
J4_9MME_0071/g/99:100,
1/g/137:138,
1/g/161:162,
1/g/180:181		No text annotation
J4_9MME_0081/g/451:452,
1/g/455:456,
1/g/467:468,
1/g/512:513		No text annotation
J4_9MME_0091/k/99:100,
1/k/137:138,
1/k/161:162,
1/k/180:181		No text annotation
J4_9MME_0101/k/451:452,
1/k/455:456,
1/k/467:468,
1/k/512:513		No text annotation
J4_9MME_0111/o/99:100,
1/o/137:138,
1/o/161:162,
1/o/180:181		No text annotation
J4_9MME_0121/o/451:452,
1/o/455:456,
1/o/467:468,
1/o/512:513		No text annotation
J4_9MME_0131/s/99:100,
1/s/137:138,
1/s/161:162,
1/s/180:181		No text annotation
J4_9MME_0141/s/451:452,
1/s/455:456,
1/s/467:468,
1/s/512:513		No text annotation
J4_9MME_0151/w/99:100,
1/w/137:138,
1/w/161:162,
1/w/180:181		No text annotation
J4_9MME_0161/w/451:452,
1/w/455:456,
1/w/467:468,
1/w/512:513		No text annotation
J5_9MME_0011/U/22:25,
1/U/55:56,
1/U/193:194,
1/U/548:550,
1/U/561:562		No text annotation
J5_9MME_0021/U/217:218,
1/U/365:366,
1/U/427:429,
1/U/446:448,
1/U/516:520		No text annotation
J5_9MME_0031/Y/22:25,
1/Y/55:56,
1/Y/193:194,
1/Y/548:550,
1/Y/561:562		No text annotation
J5_9MME_0041/Y/217:218,
1/Y/365:366,
1/Y/427:429,
1/Y/446:448,
1/Y/516:520		No text annotation
J5_9MME_0051/c/22:25,
1/c/55:56,
1/c/193:194,
1/c/548:550,
1/c/561:562		No text annotation
J5_9MME_0061/c/217:218,
1/c/365:366,
1/c/427:429,
1/c/446:448,
1/c/516:520		No text annotation
J5_9MME_0071/g/22:25,
1/g/55:56,
1/g/193:194,
1/g/548:550,
1/g/561:562		No text annotation
J5_9MME_0081/g/217:218,
1/g/365:366,
1/g/427:429,
1/g/446:448,
1/g/516:520		No text annotation
J5_9MME_0091/k/22:25,
1/k/55:56,
1/k/193:194,
1/k/548:550,
1/k/561:562		No text annotation
J5_9MME_0101/k/217:218,
1/k/365:366,
1/k/427:429,
1/k/446:448,
1/k/516:520		No text annotation
J5_9MME_0111/o/22:25,
1/o/55:56,
1/o/193:194,
1/o/548:550,
1/o/561:562		No text annotation
J5_9MME_0121/o/217:218,
1/o/365:366,
1/o/427:429,
1/o/446:448,
1/o/516:520		No text annotation
J5_9MME_0131/s/22:25,
1/s/55:56,
1/s/193:194,
1/s/548:550,
1/s/561:562		No text annotation
J5_9MME_0141/s/217:218,
1/s/365:366,
1/s/427:429,
1/s/446:448,
1/s/516:520		No text annotation
J5_9MME_0151/w/22:25,
1/w/55:56,
1/w/193:194,
1/w/548:550,
1/w/561:562		No text annotation
J5_9MME_0161/w/217:218,
1/w/365:366,
1/w/427:429,
1/w/446:448,
1/w/516:520		No text annotation

Problematic loops

No problematic loops


Coloring options:
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